pantierra/efast-phenocam-validation
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

Improved debug output.

Browse source
This commit is contained in:
Felix Delattre 2026-06-11 17:58:40 +02:00
parent 12578dd1f2
commit 6b7395b617
2 changed files with 17 additions and 11 deletions
Download patch file Download diff file Expand all files Collapse all files

11
run-pipeline.py
View file

@ -1,9 +1,11 @@
"""Pipeline wrapper: run steps 1 → 2 → 3 → 4 → 5.
Steps 1 and 2 run once for the whole year (skipped when their output already
exists). Steps 3–5 run site-by-site for every PASS site from
``data/phenocam_screening/{year}.json``; a site is skipped entirely when
``data/metrics/{year}/{site}/metrics.json`` already exists.
exists). Steps 3 and 4 run site-by-site for every PASS site from
``data/phenocam_screening/{year}.json``; a site is skipped when
``data/metrics/{year}/{site}/metrics.json`` already exists. Step 5 always
runs once at the end without ``--site`` so that ``manifest.json`` is written
with all processed sites (not just the last one).
Any failure stops the run immediately. Fix the issue and re-run — completed
steps and sites are skipped automatically.
@ -11,7 +13,7 @@ steps and sites are skipped automatically.
CLI:
- ``--evaluation-year`` (default 2025)
- ``--site`` single site to run steps 3–5 for (default: all PASS sites)
- ``--site`` single site to run steps 3–4 for (default: all PASS sites)
"""
from __future__ import annotations
@ -36,7 +38,6 @@ GLOBAL_STEPS: list[tuple[str, Path]] = [
PER_SITE_STEPS = [
"3-sentinel-data.py",
"4-fusion.py",
"5-metrics.py",
]