foo

.gitignore

@@ -1,5 +1,6 @@
 # Project data
 data/*
+webapp/data
 
 # Environment
 .env

metrics_indices.py

@@ -459,6 +459,37 @@ def _create_bands_timeseries_for_dir(input_dir, output_dir, site_position, sourc
     print(f"[BANDS-{source_name}] Saved: {output_dir / 'timeseries.json'} ({len(timeseries)} entries)")
 
 
+def _write_export(ndvi_dir, gcc_dir, bands_dir, export_dir):
+    """Merge ndvi, gcc, bands into combined timeseries.json and timeseries.csv."""
+    def load(p):
+        p = Path(p)
+        if not p.exists():
+            return []
+        try:
+            return json.loads((p / "timeseries.json").read_text())
+        except Exception:
+            return []
+    ndvi = {str(t.get("date", ""))[:10]: t for t in load(ndvi_dir)}
+    gcc = {str(t.get("date", ""))[:10]: t for t in load(gcc_dir)}
+    bands = {str(t.get("date", ""))[:10]: t for t in load(bands_dir)}
+    keys = sorted(set(ndvi) | set(gcc) | set(bands))
+    merged = []
+    for k in keys:
+        r = {"date": k, "filename": ""}
+        for d in [ndvi.get(k, {}), gcc.get(k, {}), bands.get(k, {})]:
+            r.update({x: d[x] for x in d if x not in ("date",)})
+        merged.append(r)
+    export_dir.mkdir(parents=True, exist_ok=True)
+    (export_dir / "timeseries.json").write_text(json.dumps(merged, indent=2))
+    cols = ["date", "filename", "ndvi", "greenness_index", "b02", "b03", "b04", "b8a"]
+    def esc(v):
+        s = str(v) if v is not None else ""
+        return f'"{s}"' if "," in s or '"' in s else s
+    rows = [cols] + [[esc(r.get(c)) for c in cols] for r in merged]
+    (export_dir / "timeseries.csv").write_text("\n".join(",".join(x) for x in rows))
+    print(f"[EXPORT] Saved {export_dir / 'timeseries.json'} and timeseries.csv ({len(merged)} entries)")
+
+
 def create_prepared_fusion_timeseries(season, site_position, site_name):
     """Generate NDVI, GCC, and band timeseries for prepared S2/S3 and fusion outputs."""
     for strategy in ["aggressive", "nonaggressive"]:
@@ -469,12 +500,14 @@ def create_prepared_fusion_timeseries(season, site_position, site_name):
                 _create_timeseries_for_dir(inp, base / "ndvi" / source, site_position, f"PREPARED-{source.upper()}-{strategy}", "*.tif")
                 _create_gcc_timeseries_for_dir(inp, base / "gcc" / source, site_position, f"PREPARED-{source.upper()}-{strategy}", "*.tif")
                 _create_bands_timeseries_for_dir(inp, base / "bands" / source, site_position, f"PREPARED-{source.upper()}-{strategy}", "*.tif")
+                _write_export(base / "ndvi" / source, base / "gcc" / source, base / "bands" / source, base / "export" / source)
         for sig, fusion_sub in [(None, "fusion"), (30, "fusion_sigma30")]:
             inp = base / fusion_sub
             if inp.exists():
                 _create_timeseries_for_dir(inp, base / "ndvi" / fusion_sub, site_position, f"FUSION-{strategy}-σ{sig or 20}", "*.tif")
                 _create_gcc_timeseries_for_dir(inp, base / "gcc" / fusion_sub, site_position, f"FUSION-{strategy}-σ{sig or 20}", "*.tif")
                 _create_bands_timeseries_for_dir(inp, base / "bands" / fusion_sub, site_position, f"FUSION-{strategy}-σ{sig or 20}", "*.tif")
+                _write_export(base / "ndvi" / fusion_sub, base / "gcc" / fusion_sub, base / "bands" / fusion_sub, base / "export" / fusion_sub)
 
 
 def create_bands_timeseries_post_process(season, site_position, site_name):
@@ -486,3 +519,4 @@ def create_bands_timeseries_post_process(season, site_position, site_name):
                 inp, out = base / source, base / "bands" / source
                 if inp.exists():
                     _create_bands_timeseries_for_dir(inp, out, site_position, f"POST-{source.upper()}-{strategy}-σ{sigma}", "*.geotiff")
+                    _write_export(base / "ndvi" / source, base / "gcc" / source, base / "bands" / source, base / "export" / source)

run.py

@@ -17,26 +17,26 @@ def run_pipeline(season, site_position, site_name):
         #download_s3(season, site_position, site_name)
         #download_phenocam(season, site_position, site_name)
 
-        print(f"Creating preselection timeseries: {site_name}, {season}")
+        # print(f"Creating preselection timeseries: {site_name}, {season}")
-        create_timeseries(season, site_position, site_name)
+        # create_timeseries(season, site_position, site_name)
 
-        print(f"Preparing S2 and S3 for fusion: {site_name}, {season}")
+        # print(f"Preparing S2 and S3 for fusion: {site_name}, {season}")
-        for strategy in ["aggressive", "nonaggressive"]:
+        # for strategy in ["aggressive", "nonaggressive"]:
-            prepare_s2(season, site_position, site_name, cleaning_strategy=strategy)
+        #     prepare_s2(season, site_position, site_name, cleaning_strategy=strategy)
-            prepare_s3(season, site_position, site_name, cleaning_strategy=strategy)
+        #     prepare_s3(season, site_position, site_name, cleaning_strategy=strategy)
 
-        print(f"Running EFAST fusion for all scenarios: {site_name}, {season}")
+        # print(f"Running EFAST fusion for all scenarios: {site_name}, {season}")
-        run_all_efast_scenarios(season, site_position, site_name)
+        # run_all_efast_scenarios(season, site_position, site_name)
 
         print(f"Creating prepared/fusion timeseries: {site_name}, {season}")
         create_prepared_fusion_timeseries(season, site_position, site_name)
 
         print(f"Post-processing: {site_name}, {season}")
-        post_process_all_scenarios(season, site_position, site_name)
+        # post_process_all_scenarios(season, site_position, site_name)
         post_process_timeseries(season, site_position, site_name)
         
         print(f"Calculating metrics: {site_name}, {season}")
-        calculate_all_metrics(season, site_name, site_position)
+        # calculate_all_metrics(season, site_name, site_position)
 
     except Exception as e:
         print(f"Error: {e}")

webapp/fusion.html

@@ -12,12 +12,16 @@
         .nav a { margin-right: 12px; color: #0066cc; text-decoration: none; }
         .nav a:hover { text-decoration: underline; }
         .nav a.active { font-weight: bold; }
-        .container { max-width: 900px; margin: 0 auto; padding: 20px; }
+        .container { max-width: 1400px; margin: 0 auto; padding: 20px; }
+        .header-sticky { position: sticky; top: 0; background: white; z-index: 1000; border-bottom: 1px solid #ccc; padding-bottom: 20px; margin-bottom: 20px; }
         .selectors { margin-bottom: 20px; }
         .selectors select { padding: 5px 10px; font-size: 14px; margin-right: 15px; }
         h1 { margin: 0 0 5px 0; font-size: 22px; }
         .season-row { padding-bottom: 15px; }
         h2 { margin: 0; font-size: 16px; color: #666; display: inline; }
+        .download-links { margin-left: 10px; font-size: 14px; }
+        .download-links a { margin-right: 8px; color: #0066cc; text-decoration: none; }
+        .download-links a:hover { text-decoration: underline; }
         #dateSlider { width: 100%; margin: 15px 0; }
         #dateDisplay { text-align: center; font-size: 14px; color: #666; }
         .map-label { font-size: 12px; margin-bottom: 3px; color: #666; }
@@ -31,6 +35,7 @@
 </head>
 <body>
     <div class="container">
+        <div class="header-sticky">
             <div class="nav">
                 <a href="index.html">Full</a>
                 <a href="preselection.html">Pre-selection</a>
@@ -39,7 +44,7 @@
                 <a href="postprocessed.html">Postprocessed</a>
             </div>
             <h1 id="siteName">Innsbruck</h1>
-        <div class="season-row"><h2 id="season">2024</h2></div>
+            <div class="season-row"><h2 id="season">2024</h2><span class="download-links" id="downloadLinks"></span></div>
             <div class="selectors">
                 <label>Site:</label>
             <select id="siteSelect"></select>
@@ -58,6 +63,7 @@
             </div>
             <input type="range" id="dateSlider" min="0" max="365" value="0">
             <div id="dateDisplay">2024-01-01</div>
+        </div>
         <div class="map-label">Fusion RGB (closest available)</div>
         <div id="mapDate" class="map-date"></div>
         <div id="fusionMap"></div>
@@ -114,6 +120,7 @@
                 ndviTs = n; gccTs = g; bandsTs = b;
             } catch { ndviTs = []; gccTs = []; bandsTs = []; }
             drawPlots();
+            updateDownloadLinks();
         }
 
         function drawPlot(canvasId, data, key, color) {
@@ -159,6 +166,15 @@
             BANDS.forEach(b => drawPlot(`plot_${b.key}`, bandsTs, b.key, b.color));
         }
 
+        function updateDownloadLinks() {
+            const el = document.getElementById("downloadLinks");
+            if (!el) return;
+            const sub = getFusionTimeseriesDir();
+            const base = `data/${siteName}/${season}/prepared_${strategy}/export/${sub}`;
+            const name = `${siteName}_${season}_fusion_${strategy}_${sub}`;
+            el.innerHTML = `<a href="${base}/timeseries.json" download="${name}.json">[JSON]</a><a href="${base}/timeseries.csv" download="${name}.csv">[CSV]</a>`;
+        }
+
         async function findFusionFile(dateStr) {
             const target = new Date(dateStr);
             const yearEnd = new Date(parseInt(season), 11, 31);

webapp/postprocessed.html

@@ -12,12 +12,16 @@
         .nav a { margin-right: 12px; color: #0066cc; text-decoration: none; }
         .nav a:hover { text-decoration: underline; }
         .nav a.active { font-weight: bold; }
-        .container { max-width: 900px; margin: 0 auto; padding: 20px; }
+        .container { max-width: 1400px; margin: 0 auto; padding: 20px; }
+        .header-sticky { position: sticky; top: 0; background: white; z-index: 1000; border-bottom: 1px solid #ccc; padding-bottom: 20px; margin-bottom: 20px; }
         .selectors { margin-bottom: 20px; }
         .selectors select { padding: 5px 10px; font-size: 14px; margin-right: 15px; }
         h1 { margin: 0 0 5px 0; font-size: 22px; }
         .season-row { padding-bottom: 15px; }
         h2 { margin: 0; font-size: 16px; color: #666; display: inline; }
+        .download-links { margin-left: 10px; font-size: 14px; }
+        .download-links a { margin-right: 8px; color: #0066cc; text-decoration: none; }
+        .download-links a:hover { text-decoration: underline; }
         #dateSlider { width: 100%; margin: 15px 0; }
         #dateDisplay { text-align: center; font-size: 14px; color: #666; }
         .map-label { font-size: 12px; margin-bottom: 3px; color: #666; }
@@ -31,6 +35,7 @@
 </head>
 <body>
     <div class="container">
+        <div class="header-sticky">
             <div class="nav">
                 <a href="index.html">Full</a>
                 <a href="preselection.html">Pre-selection</a>
@@ -39,7 +44,7 @@
                 <a href="postprocessed.html" class="active">Postprocessed</a>
             </div>
             <h1 id="siteName">Innsbruck</h1>
-        <div class="season-row"><h2 id="season">2024</h2></div>
+            <div class="season-row"><h2 id="season">2024</h2><span class="download-links" id="downloadLinks"></span></div>
             <div class="selectors">
                 <label>Site:</label>
             <select id="siteSelect"></select>
@@ -64,6 +69,7 @@
             </div>
             <input type="range" id="dateSlider" min="0" max="365" value="0">
             <div id="dateDisplay">2024-01-01</div>
+        </div>
         <div class="map-label">Postprocessed RGB (closest available)</div>
         <div id="mapDate" class="map-date"></div>
         <div id="postprocessedMap"></div>
@@ -112,6 +118,7 @@
                 ndviTs = n; gccTs = g; bandsTs = b;
             } catch { ndviTs = []; gccTs = []; bandsTs = []; }
             drawPlots();
+            updateDownloadLinks();
         }
 
         function drawPlot(canvasId, data, key, color) {
@@ -157,6 +164,14 @@
             BANDS.forEach(b => drawPlot(`plot_${b.key}`, bandsTs, b.key, b.color));
         }
 
+        function updateDownloadLinks() {
+            const el = document.getElementById("downloadLinks");
+            if (!el) return;
+            const base = `data/${siteName}/${season}/processed_${strategy}_sigma${sigma}/export/${source}`;
+            const name = `${siteName}_${season}_postprocessed_${strategy}_sigma${sigma}_${source}`;
+            el.innerHTML = `<a href="${base}/timeseries.json" download="${name}.json">[JSON]</a><a href="${base}/timeseries.csv" download="${name}.csv">[CSV]</a>`;
+        }
+
         async function findProcessedFile(dateStr) {
             const target = new Date(dateStr);
             const yearEnd = new Date(parseInt(season), 11, 31);

webapp/prepared.html

@@ -12,12 +12,16 @@
         .nav a { margin-right: 12px; color: #0066cc; text-decoration: none; }
         .nav a:hover { text-decoration: underline; }
         .nav a.active { font-weight: bold; }
-        .container { max-width: 900px; margin: 0 auto; padding: 20px; }
+        .container { max-width: 1400px; margin: 0 auto; padding: 20px; }
+        .header-sticky { position: sticky; top: 0; background: white; z-index: 1000; border-bottom: 1px solid #ccc; padding-bottom: 20px; margin-bottom: 20px; }
         .selectors { margin-bottom: 20px; }
         .selectors select { padding: 5px 10px; font-size: 14px; margin-right: 15px; }
         h1 { margin: 0 0 5px 0; font-size: 22px; }
         .season-row { padding-bottom: 15px; }
         h2 { margin: 0; font-size: 16px; color: #666; display: inline; }
+        .download-links { margin-left: 10px; font-size: 14px; }
+        .download-links a { margin-right: 8px; color: #0066cc; text-decoration: none; }
+        .download-links a:hover { text-decoration: underline; }
         #dateSlider { width: 100%; margin: 15px 0; }
         #dateDisplay { text-align: center; font-size: 14px; color: #666; }
         .map-label { font-size: 12px; margin-bottom: 3px; color: #666; }
@@ -31,6 +35,7 @@
 </head>
 <body>
     <div class="container">
+        <div class="header-sticky">
             <div class="nav">
                 <a href="index.html">Full</a>
                 <a href="preselection.html">Pre-selection</a>
@@ -39,7 +44,7 @@
                 <a href="postprocessed.html">Postprocessed</a>
             </div>
             <h1 id="siteName">Innsbruck</h1>
-        <div class="season-row"><h2 id="season">2024</h2></div>
+            <div class="season-row"><h2 id="season">2024</h2><span class="download-links" id="downloadLinks"></span></div>
             <div class="selectors">
                 <label>Site:</label>
             <select id="siteSelect"></select>
@@ -58,6 +63,7 @@
             </div>
             <input type="range" id="dateSlider" min="0" max="365" value="0">
             <div id="dateDisplay">2024-01-01</div>
+        </div>
         <div class="map-label" id="mapLabel">Prepared RGB (closest available)</div>
         <div id="mapDate" class="map-date"></div>
         <div id="preparedMap"></div>
@@ -106,6 +112,7 @@
                 ndviTs = n; gccTs = g; bandsTs = b;
             } catch { ndviTs = []; gccTs = []; bandsTs = []; }
             drawPlots();
+            updateDownloadLinks();
         }
 
         function drawPlot(canvasId, data, key, color) {
@@ -151,6 +158,14 @@
             BANDS.forEach(b => drawPlot(`plot_${b.key}`, bandsTs, b.key, b.color));
         }
 
+        function updateDownloadLinks() {
+            const el = document.getElementById("downloadLinks");
+            if (!el) return;
+            const base = `data/${siteName}/${season}/prepared_${strategy}/export/${source}`;
+            const name = `${siteName}_${season}_prepared_${strategy}_${source}`;
+            el.innerHTML = `<a href="${base}/timeseries.json" download="${name}.json">[JSON]</a><a href="${base}/timeseries.csv" download="${name}.csv">[CSV]</a>`;
+        }
+
         async function findPreparedFile(dateStr) {
             const target = new Date(dateStr);
             const yearEnd = new Date(parseInt(season), 11, 31);