pantierra/efast-phenocam-validation
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Added gcc suitability stats.

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Felix Delattre 2026-06-17 12:29:35 +02:00
parent d55ee31e8d
commit a593683314
3 changed files with 907 additions and 15 deletions
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README.md
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@ -14,6 +14,7 @@ End-to-end pipeline from selecting sites from the global [PhenoCam Network](http
| 4 | `4-fusion.py` | Run EFAST BtI (fuse reflectance → GCC) and ItB (fuse GCC directly) for each screened site |
| 5 | `5-metrics.py` | Extract PhenoCam-matched timeseries, compute NSE/RMSE/r baselines and fusion metrics, emit per-site JSON and webapp manifest |
| 6 | `6-statistics-fusion-order.py` | Paired ItB-vs-BtI significance test (Wilcoxon + t-test) across all sites |
| 7 | `7-gcc-suitability.py` | PhenoCam GCC suitability as a fusion-accuracy reference (representativeness + LOOCV concordance) |
---
@ -43,9 +44,10 @@ uv run python 3-sentinel-data.py --evaluation-year 2025
uv run python 4-fusion.py --evaluation-year 2025
uv run python 5-metrics.py --evaluation-year 2025
uv run python 6-statistics-fusion-order.py --evaluation-year 2025
uv run python 7-gcc-suitability.py --evaluation-year 2025
```
Steps 1–5 accept `--evaluation-year` (default `2025`) and `--site` (optional, for single-site runs). Step 6 is a full-sample aggregate and only accepts `--evaluation-year` and `--alpha` (default `0.05`). Steps 3–5 are resumable — existing output files are skipped.
Steps 1–5 accept `--evaluation-year` (default `2025`) and `--site` (optional, for single-site runs). Steps 6–7 are full-sample aggregates and only accept `--evaluation-year` (Step 6 and 7 also accept `--alpha`; Step 7 adds `--min-cloudfree-s2`, default `10`). Steps 3–5 are resumable — existing output files are skipped.
```bash
# single site
@ -73,6 +75,7 @@ Step 3 S3 download uses CDSE OpenEO (`SENTINEL3_SYN_L2_SYN`). Set `CDSE_USER` an
| `metrics/{year}/{site}/` | 5 | Per-site timeseries, metrics, covariates JSON |
| `metrics/manifest.json` | 5 | Webapp manifest (years + site metadata) |
| `statistics_fusion_order/{year}.json` | 6 | Paired ItB-vs-BtI test summary (NSE, RMSE, nRMSE, r) |
| `gcc_suitability/{year}.json` | 7 | PhenoCam GCC suitability summary (representativeness + LOOCV concordance) |
---
@ -80,7 +83,7 @@ Step 3 S3 download uses CDSE OpenEO (`SENTINEL3_SYN_L2_SYN`). Set `CDSE_USER` an
`python3 -m http.server 8080` runs the webapp on [http://localhost:8000/index.html](http://localhost:8000/index.html). Requires step 5 output (`data/metrics/manifest.json`).
`python3 -m http.server 8080` runs the webapp on [http://localhost:8000/index.html](http://localhost:8000/index.html). Requires step 5 output (`data/metrics/manifest.json`). The Statistics overlay GCC suitability tab uses step 7 output (`data/gcc_suitability/{year}.json`).
---