pantierra/efast-phenocam-validation
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

Added post-processing to align area size.

Browse source
This commit is contained in:
Felix Delattre 2026-01-11 12:33:43 +01:00
parent cd1a7d0ab8
commit bf92a399e2
5 changed files with 202 additions and 108 deletions
Download patch file Download diff file Expand all files Collapse all files

41
ndvi.py
View file

@ -190,36 +190,35 @@ def _fusion_namer(f):
return f"{date_str}_ndvi.geotiff"
def generate_ndvi_prepared(season, site_position, site_name):
def generate_ndvi_post_process(season, site_position, site_name):
for source in ["s2", "s3"]:
input_dir = Path(f"data/{site_name}/{season}/prepared/{source}/")
output_dir = Path(f"data/{site_name}/{season}/prepared/ndvi/{source}/")
for pattern in ["*.geotiff", "*.tif"]:
_process_ndvi_files(
input_dir,
output_dir,
f"PREPARED-{source.upper()}",
pattern=pattern,
output_namer=_get_output_name_prepared,
)
input_dir = Path(f"data/{site_name}/{season}/processed/{source}/")
output_dir = Path(f"data/{site_name}/{season}/processed/ndvi/{source}/")
_process_ndvi_files(
input_dir,
output_dir,
f"POST-PROCESS-{source.upper()}",
pattern="*.geotiff",
output_namer=lambda f: f.name.replace(".geotiff", "_ndvi.geotiff"),
)
input_dir = Path(f"data/{site_name}/{season}/prepared/fusion/")
output_dir = Path(f"data/{site_name}/{season}/prepared/ndvi/fusion/")
input_dir = Path(f"data/{site_name}/{season}/processed/fusion/")
output_dir = Path(f"data/{site_name}/{season}/processed/ndvi/fusion/")
_process_ndvi_files(
input_dir,
output_dir,
"FUSION",
pattern="REFL_*.tif",
output_namer=_fusion_namer,
"POST-PROCESS-FUSION",
pattern="*.geotiff",
output_namer=lambda f: f.name.replace(".geotiff", "_ndvi.geotiff"),
)
def create_ndvi_timeseries_prepared(season, site_position, site_name):
def create_ndvi_timeseries_post_process(season, site_position, site_name):
for source in ["s2", "s3"]:
output_dir = Path(f"data/{site_name}/{season}/prepared/ndvi/{source}/")
output_dir = Path(f"data/{site_name}/{season}/processed/ndvi/{source}/")
_create_timeseries_for_dir(
output_dir, site_position, f"PREPARED-{source.upper()}"
output_dir, site_position, f"POST-PROCESS-{source.upper()}"
)
output_dir = Path(f"data/{site_name}/{season}/prepared/ndvi/fusion/")
_create_timeseries_for_dir(output_dir, site_position, "FUSION")
output_dir = Path(f"data/{site_name}/{season}/processed/ndvi/fusion/")
_create_timeseries_for_dir(output_dir, site_position, "POST-PROCESS-FUSION")